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Broad Institute Inc trinity software
Trinity Software, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/trinity+software/trinity+software/pm40352766-66-8-31
Average 90 stars, based on 1 article reviews
trinity software - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

other:

Article Title: Identification, expression profiling and potential functional roles of nuclear receptors in the social aphid Pseudoregma bambucicola.
Article Snippet: We then used Trinity [30] software to assemble these clean reads into Unigene sequences.

Software:

Article Title: Comparative Analysis of Salt Tolerance and Transcriptomics in Two Varieties of Agropyron desertorum at Different Developmental Stages.
Article Snippet: .. De novo transcriptome assembly was performed using Trinity software (version: 2.4, Beijing Novogene Company, Beijing, China) [30], following standard protocols as described in previous studies. ..

Article Title: Comparative Transcriptome Analysis of the Effects of a Non-Insect Artificial Diet on the Nutritional Development of Harmonia axyridis .
Article Snippet: .. De novo transcriptome assembly was performed using Trinity software (http://TrinityRNASeq.sourceforge.net, accessed on 1 June 2024) with the filtered RNA- Insects 2025, 16, 380 5 of 15 seq data [35]. .. Redundant contigs were clustered and removed via CD-HIT, generating a non-redundant unigene dataset.

Article Title: The short-term effect of nitrogen and phosphorus fertilizers on cold resistance in Urtica cannabina based on transcriptomics and metabolomics analysis
Article Snippet: .. Transcriptome assembly was performed using Trinity software (version 2.13.2) using both the cleaned Illumina short reads and Nanopore long reads by implementing the long-reads flag. ..

Article Title: Functional annotation and analysis of the hard tick Dermacentor nuttalli midgut genes.
Article Snippet: In this study, to analyze and compare the midgut transcriptomes of D. nuttalli female ticks at different blood-feeding times, the RNA was extracted from three replicated biological samples of midgut tissue from each physiological condition, and sequenced, assembled, and annotated the samples on the Illumina HiSeq system. .. We obtained the unigene set by utilizing Trinity software to assemble the clean reads, followed by the removal of redundant transcripts through a series of algorithms and filtering steps. ..

Article Title: De novo assembly, gene annotation and marker development using illumina paired-end transcriptome sequences in nutmeg ( Myristica fragrans Houtt . ).
Article Snippet: Nutmeg (Myristica fragrans) is a high-value spice crop widely utilized in culinary, medicinal, and industrial sectors.. Despite its economic and cultural significance, genetic research on nutmeg is severely limited, hindering efforts to improve its cultivation and breeding programs.. The lack of molecular markers and genetic tools has further constrained the development of superior trait varieties.

Article Title: The multi-omics approach reveals the impact of Temnocephala digitata infection on Macrobrachium rosenbergii
Article Snippet: Macrobrachium rosenbergii (M. rosenbergii) is a vital freshwater economic species, and no prior reports exist on its infection by the symbiotic flatworm Temnocephala digitata (Platyhelminthes: Temnocephalidae; T. digitata).. However, during aquaculture practices, we observed that T. digitata infection caused growth retardation and even mortality in M. rosenbergii.. This study investigates the pathogenic mechanisms of T. digitata infection in M. rosenbergii using a multi-omics approach.

RNA sequencing:

Article Title: De novo assembly, gene annotation and marker development using illumina paired-end transcriptome sequences in nutmeg ( Myristica fragrans Houtt . ).
Article Snippet: Nutmeg (Myristica fragrans) is a high-value spice crop widely utilized in culinary, medicinal, and industrial sectors.. Despite its economic and cultural significance, genetic research on nutmeg is severely limited, hindering efforts to improve its cultivation and breeding programs.. The lack of molecular markers and genetic tools has further constrained the development of superior trait varieties.



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